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Table 1 Assembly statistics of Salmonella strains

From: Genome analysis of Salmonella strains isolated from imported frozen fish in Burkina Faso

Isolate ID Contigs Scaffolds Genome size Longest scaffold N50 Raw reads EC reads % reads passing EC Raw nt EC nt % nt passing EC Raw cov EC cov Median cov 10th percentile cov Bases ≥ Q40 % GC
87 61 61 4621725 703602 292745 2075760 2055651 99.03 3.9E+08 3.6E+08 93.77 83.55 78.35 82 59 4617943 52.2
88 61 61 4654102 433362 231906 2480308 2461694 99.25 3.5E+08 3.4E+08 97.2 74.39 72.31 73 54 4651947 52.2
89 180 180 5345366 265739 89976 1585778 1571781 99.12 2.1E+08 2E+08 96.96 39.18 37.99 37 24 5332372 51.8
95 40 40 4680005 668083 504361 2410566 2379641 98.72 4.7E+08 4.4E+08 92.32 100.7 93.01 97 72 4679387 52.2
98 63 63 4918496 775042 398010 1718264 1687773 98.23 3.3E+08 3.1E+08 92.42 67.53 62.41 65 46 4916559 51.9
100 80 80 4963160 748091 287769 2265232 2202986 97.25 4.4E+08 3.9E+08 88.29 89.07 78.65 85 62 4961107 52
101 52 52 4902134 944301 501799 1868462 1821376 97.48 3.8E+08 3.4E+08 90.4 77.46 70.02 74 54 4900597 51.8
103 49 49 4749239 1151741 340547 2323594 2296420 98.83 4.5E+08 4.2E+08 93.23 93.97 87.61 87 63 4748210 52.2
108 44 44 4738594 568197 405801 2091224 2069633 98.97 3.6E+08 3.5E+08 95.15 76.54 72.83 74 55 4737525 52.2
111 47 47 4741632 568232 454680 2514870 2487391 98.91 4.9E+08 4.5E+08 92.81 102.4 95.07 99 76 4740854 52.2
113 49 49 4749008 1444467 340548 2281594 2260595 99.08 4.6E+08 4.3E+08 93.21 97.31 90.7 92 69 4748045 52.2
116 38 38 4661074 871623 424548 1877226 1855294 98.83 3.6E+08 3.3E+08 92.87 76.86 71.37 74 54 4659622 52.2
117 44 44 4739093 568232 427385 2101626 2085634 99.24 3.6E+08 3.5E+08 95.73 76.7 73.42 74 55 4738049 52.2
119 51 51 4730026 508935 323835 1916062 1891245 98.7 2.5E+08 2.4E+08 97.36 52 50.62 50 35 4728141 52.2
122 64 64 4732251 461578 226770 2578950 2550077 98.88 3.4E+08 3.3E+08 96.81 72.58 70.26 71 49 4730117 52.2
127 46 46 4740433 568232 394001 1464044 1447638 98.88 2.6E+08 2.4E+08 95.1 53.95 51.31 52 36 4738090 52.2
128 52 52 4729542 454349 323835 1476660 1454883 98.53 1.9E+08 1.8E+08 97.27 39.56 38.48 38 26 4726471 52.2
129 43 43 4617569 720868 300407 1313142 1295563 98.66 2.4E+08 2.2E+08 93.89 51.58 48.43 50 34 4614768 52.2
130 43 43 4740056 568232 400228 3575342 3520930 98.48 6.6E+08 6E+08 91.2 138.7 126.5 133 101 4739679 52.2
131 53 53 4741832 568232 394156 1566306 1545820 98.69 2.9E+08 2.7E+08 91.49 62.2 56.91 60 42 4739118 52.2
134 34 34 4797111 1850190 750647 2710124 2671347 98.57 5.3E+08 4.8E+08 91.32 110.4 100.8 106 78 4796675 52.2
135 54 54 4903282 944125 424401 2061468 1996430 96.85 3.7E+08 3.3E+08 87.78 75.59 66.35 71 50 4901400 51.8
136 46 46 4747148 857353 340487 1895802 1849828 97.57 3.3E+08 3E+08 90 69.25 62.33 63 43 4745627 52.2
137 44 44 4739464 514012 394016 2219520 2160947 97.36 4.1E+08 3.6E+08 88.01 87.08 76.64 83 60 4738438 52.2
138 42 42 4617148 720868 331382 1581084 1563497 98.89 3.1E+08 2.8E+08 90.95 67.5 61.39 65 46 4615739 52.2
139 45 45 4740410 514012 394637 2120290 2100494 99.07 3.8E+08 3.6E+08 94.39 80.57 76.06 78 56 4739354 52.2
141 71 71 4730418 434837 164778 1976130 1952830 98.82 2.7E+08 2.6E+08 96.44 56.5 54.49 55 39 4726407 52.2
142 45 45 4620013 720868 387756 2282854 2264502 99.2 4.4E+08 4.1E+08 93.92 95.63 89.81 93 68 4619149 52.2
144 688 688 5699254 126378 26527 1655604 1640692 99.1 3.3E+08 3.1E+08 93.14 58.29 54.29 58 27 5652021 51.6
146 385 385 5031347 222688 74906 2781576 2757394 99.13 3.7E+08 3.6E+08 97.48 72.79 70.96 73 46 4988376 52.1
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Annals of Microbiology

ISSN: 1869-2044

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