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Table 2 Antisense RNAs transcribed within the ORF or UTR of genes with more than 1-fold expression change after nitrogen step-down

From: Identification of small RNAs involved in nitrogen fixation in Anabaena sp. PCC 7120 based on RNA-seq under steady state conditions

GeneGene functionsRNA IDRNA locationRPKM log2 ratio
all013630S ribosomal protein S1sRNA0120all01361.92
all0270Diacylglycerol kinasesRNA0158all0270 ORF3.56
all0271Hypothetical proteinsRNA0161all0271 3' UTR1.28
all1290PvuII DNA methyltransferasesRNA0332all1290 3' UTR1.36
all2096OxidasesRNA0499all2096 5' UTR1.19
all2457Hypothetical proteinsRNA0573all24571.08
all3226Hypothetical proteinsRNA0711all3226 3' UTR2.45
all5062Glyceraldehyde-3-phosphate dehydrogenasesRNA1145all5062− 1.31
all5098Hypothetical proteinsRNA1153all5098− 10.42
all7592Cation transporting ATPasesRNA0055all7592-asl7593 intergenic region11.38
alr0821Hypothetical proteinsRNA0259alr0821 ORF3.43
alr0877Probable acylphosphatasesRNA0272alr08771.64
alr1044Transcriptional regulatorsRNA0295alr1044 ORF and 5' UTR− 12.39
alr1139Hypothetical proteinsRNA0305alr1139 ORF− 11.35
alr1231Two-component hybrid sensor and regulatorsRNA0320alr1231-alr1232 intergenic region3.94
alr1669Similar to chitooligosaccharide deacetylase NodBsRNA0411alr16692.39
alr2125Unknown proteinsRNA0503alr21251.01
alr2887Outer-membrane protein TolCsRNA0636alr2887-alr2888 intergenic region1.54
alr2895Imidazoleglycerol-phosphate synthase, cyclase subunit HisFsRNA0639alr2895-asr2896 intergenic region− 2.78
alr3018Probable DNA polymerase, bacteriophage-typesRNA0668alr3018− 2.51
alr3415Hypothetical proteinsRNA0755alr3415 5' UTR− 1.24
alr3479Similar to nitrogen regulation protein NtrRsRNA0768alr3479 ORF− 11.32
alr4156NADH dehydrogenase subunit 5sRNA0956alr4156 5' UTR1.84
alr4577Lipoprotein signal peptidasesRNA1042alr4577-all4578 intergenic region− 10.55
alr4718ATP-dependent RNA helicasesRNA1072alr4718 5' UTR− 1.25
asl0822Hypothetical proteinsRNA0260asl0822 3' UTR11.11
asr0098Unknown proteinsRNA0103asr0098 5' UTR− 2.12
asr2016Unknown proteinsRNA0468asr20162.26
asr4319Photosystem I protein EsRNA0987asr4319− 3.2
  1. Gene functions were retrieved from cyanobase (http://genome.microbedb.jp/CyanoBase). Positive RPKM log2 ratio indicates upregulation and negative values indicate downregulation
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Annals of Microbiology

ISSN: 1869-2044

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